Debojyoti Das

Debojyoti Das

Computational Biology | Bioinformatics | Biostatistics

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A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.

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publications

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Marginal states in a cubic autocatalytic reaction

Published in The Journal of chemical physics, 2011

Recommended citation: Das, D., Ghosh, P. and Ray, D.S., 2011. Marginal states in a cubic autocatalytic reaction. The Journal of chemical physics, 135(12).
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Dynamical hysteresis in a self-oscillating polymer gel

Published in The Journal of Chemical Physics, 2012

Recommended citation: Das, D., Das, M. and Ray, D.S., 2012. Dynamical hysteresis in a self-oscillating polymer gel. The Journal of Chemical Physics, 137(6).
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Dichotomous-noise-induced pattern formation in a reaction-diffusion system

Published in Physical Review E, 2013

Recommended citation: Das, D. and Ray, D.S., 2013. Dichotomous-noise-induced pattern formation in a reaction-diffusion system. Physical Review E—Statistical, Nonlinear, and Soft Matter Physics, 87(6), p.062924.
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Multiple time scale based reduction scheme for nonlinear chemical dynamics

Published in The European Physical Journal Special Topics, 2013

Recommended citation: Das, D. and Ray, D.S., 2013. Multiple time scale based reduction scheme for nonlinear chemical dynamics. The European Physical Journal Special Topics, 222(3), pp.785-798.
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Chemical memory erasure; a photochemical model

Published in Physical Review E, 2014

Recommended citation: Das, D., Das, M. and Ray, D.S., 2014. Chemical memory erasure; a photochemical model. The European Physical Journal B, 87, pp.1-7.
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Landauer’s blowtorch effect as a thermodynamic cross process: Brownian cooling

Published in Physical Review E, 2015

Recommended citation: Das, M., Das, D., Barik, D. and Ray, D.S., 2015. Landauer's blowtorch effect as a thermodynamic cross process: Brownian cooling. Physical Review E, 92(5), p.052102.
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Flow-induced arrest of spatiotemporal chaos and transition to a stationary pattern in the Gray-Scott model

Published in Physical Review E, 2015

Recommended citation: Das, D., 2015. Flow-induced arrest of spatiotemporal chaos and transition to a stationary pattern in the Gray-Scott model. Physical Review E, 92(5), p.052914.
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Turing pattern formation in anisotropic medium

Published in Journal of Mathematical Chemistry, 2017

Recommended citation: Das, D., 2017. Turing pattern formation in anisotropic medium. Journal of Mathematical Chemistry, 55(3), 15(1-3), pp.47-68.
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Embryonic temperature programs phenotype in reptiles

Published in Frontiers in Physiology, 2020

Recommended citation: Singh, S.K., Das, D. and Rhen, T., 2020. Embryonic temperature programs phenotype in reptiles. Frontiers in Physiology, 11, p.35.
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Draft Genome of the Common Snapping Turtle, Chelydra serpentina, a Model for Phenotypic Plasticity in Reptiles

Published in G3: Genes, Genomes, Genetics, 2020

Recommended citation: Das, D., Singh, S.K., Bierstedt, J., Erickson, A., Galli, G.L., Crossley, D.A. and Rhen, T., 2020. Draft genome of the common snapping turtle, Chelydra serpentina, a model for phenotypic plasticity in reptiles. G3: Genes, Genomes, Genetics, 10(12), pp.4299-4314.
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Meta-analysis of gene popularity: Less than half of gene citations stem from gene regulatory networks

Published in Genes, 2021

Recommended citation: Mihai, I.S., Das, D., Maršalkaite, G. and Henriksson, J., 2021. Meta-analysis of gene popularity: Less than half of gene citations stem from gene regulatory networks. Genes, 12(2), p.319.
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Evolutionary turnover in wnt gene expression but conservation of wnt signaling during ovary determination in a TSD reptile

Published in Sexual Development, 2021

Recommended citation: Rhen, T., Even, Z., Brenner, A., Lodewyk, A., Das, D., Singh, S. and Simmons, R., 2021. Evolutionary turnover in wnt gene expression but conservation of wnt signaling during ovary determination in a TSD reptile. Sexual Development, 15(1-3), pp.47-68.
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Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle

Published in Epigenetics & Chromatin, 2021

Recommended citation: Ruhr, I., Bierstedt, J., Rhen, T., Das, D., Singh, S.K., Miller, S., Crossley, D.A. and Galli, G.L., 2021. Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle. Epigenetics & Chromatin, 14, pp.1-42.
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Serine protease inhibitors restrict host susceptibility to SARS-CoV-2 infections

Published in MBio, 2022

Recommended citation: Rosendal, E., Mihai, I.S., Becker, M., Das, D., Frängsmyr, L., Persson, B.D., Rankin, G.D., Gröning, R., Trygg, J., Forsell, M. and Ankarklev, J., 2022. Serine protease inhibitors restrict host susceptibility to SARS-CoV-2 infections. MBio, 13(3), pp.e00892-22.
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Breastfeeding decreases the risk of developing psoriasis through to early adulthood (Editor’s Choice & Cover Image)

Published in British Journal of Dermatology, 2024

Recommended citation: Das, D., Thimjo, J., Lebena, A., Guo, A., Enerbäck, C. and Ludvigsson, J., 2024. Breastfeeding decreases the risk of developing psoriasis through to early adulthood. British Journal of Dermatology, 191(1), pp.65-74.
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A scalable CRISPR-Cas9 gene editing system facilitates CRISPR screens in the malaria parasite Plasmodium berghei

Published in Nucleic Acids Research, 2025

Recommended citation: Jonsdottir, T.K., Paoletta, M.S., Ishizaki, T., Hernandez, S., Ivanova, M., Herrera Curbelo, A., Saiki, P.A., Selinger, M., Das, D., Henriksson, J. and Bushell, E.S., 2025. A scalable CRISPR-Cas9 gene editing system facilitates CRISPR screens in the malaria parasite Plasmodium berghei. Nucleic Acids Research, 53(2), p.gkaf005.
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