Principal Research Engineer

Clinical Genomics Linköping
&
Department of Biomedical and Clinical Sciences
Linköping University, Linköping, Sweden
Jun. 2024 ‑ May. 2025

cellranger_snakemake Conceptualized and developed a snakemake pipeline for single cell rna-seq (10X Genomics) data analysis
scQCAD Conceptualized and developed a Seurat wrapper to generates a range of outputs for QC, visualization, and downstream analysis of aggregated cellranger results
completeolink Conceptualized and developed a shiny app for end-to-end solution for OLINK (proteomics) data analysis
enrichedmassspec Conceptualized and developed a shiny app for downstream analysis of differentially expressed protein (DEP) in Mass Spectrometry data (from Spectronaut software) – visualization, and enrichment analysis
Pathway Enrichment analysis of mass spectrometry protein data for a project studying the effect of topical treatment on psoriatic hyperproliferation Manuscript communicated
Comparative transcriptome analyses of psoriasis and squamous cell carcinoma